Use this method by the Babadi lab for extracting functional network dynamics by adaptive Granger causality analysis from calcium imaging or ephys data. Read it here in PNAS.
Our first venture into studying A1 during behavior shows that A1 activity encodes sensory information as well as decision making.
Read “Small networks Encode Decision-Making in Auditory Cortex” in Neuron. Great collaboration with Behtash Babadi.
“Neonatal Hypoxia-Ischemia Causes Functional Circuit Changes in Subplate Neurons”. Read it here in Cerebral Cortex
Great collaboration with McQuillen lab at UCSF (Mcquillen lab).
L2/3 of auditory cortex has distinct functional subcurcuits and sublaminar organization. Read Ying’s paper here.
Use this fast method developed in collaboration with the Losert lab to correct for motion. It is all described in Samira’s paper in Frontiers and code is on github. Send feedback!
Distinct Translaminar Glutamatergic Circuits to GABAergic Interneurons in the Neonatal Auditory Cortex. Get it from Cell Reports.
Use this method by the Babadi lab for better spike extraction from calcium imaging data. Read it in IEEE Trans. in Biomed Eng.
Ying’s paper showing that intracortical circuits in thalamorecipient layers of auditory cortex refine after visual deprivation is published in eNeuro.